· Siyuan Zhang, Tingting Cui, Xiaowen Liu, Manjun Zhan, Xin Song, Yi Xu, Ran Yu*. 2024. Sludge biolysis pretreatment to reduce antibiotic resistance genes (ARGs): Insight into the relationship between potential ARGs hosts and BALOs' preferred prey, Water Research, 15:121949
· Xiaodong Zhang, Tao Long, Shaopo Deng, Qiang Chen, Sheng Chen, Moye Luo, Ran Yu*, Xin Zhu*. 2023. Machine Learning Modeling Based on Microbial Community for Prediction of Natural Attenuation in Groundwater, Environmental Science & Technology, 57(50): 21212–21223
· Moye Luo, Shaohua Cao, Chenghua Xu, Xiaodong Zhang, Xin Zhu, Manjun Zhan, Dandan Yu, Tao Long*, Ran Yu*. 2024. An approach for estimating microbial growth and chlorinated ethenes biotransformation in groundwater based on discrete observations, Environmental Pollution, 356: 124332
· Moye Luo, Xiaodong Zhang, Xin Zhu, Tao Long, Shaohua Cao*, Ran Yu*.2024. Bioremediation of chlorinated ethenes contaminated groundwater and the reactive transport modeling – A review, Environmental Research, 240, Part 2:117389
· Shihong Chen, Jun Gu, Siyuan Zhang, Ran Yu*.2024. Application of hyperthermophiles in sludge composting: a review, Environmental Chemistry Letters
· Runyu Zhao, Huan Gao, Ran Yu*.2023. Dissolved oxygen benefits N-decanoyl-homoserine lactone regulated biological nitrogen removal system to resist acute ZnO nanoparticle exposure,Environmental Research, 228: 115806e
· Moye Luo, Xiaodong Zhang, Tao Long, Sheng Chen, Manjun Zhan, Xin Zhu*, Ran Yu*.2023. Modeling and optimization study on degradation of organic contaminants using nZVI activated persulfate based on response surface methodology and artificial neural network: a case study of benzene as the model pollutant, Frontiers in Chemistry, 11:1270730
· Huan Gao, Runyu Zhao, Zeyu Wu, Jinyu Ye, Lijie Duan, Ran Yu*.2023. New insights into exogenous N-acyl-homoserine lactone manipulation in biological nitrogen removal system against ZnO nanoparticle shock, Bioresource Technology, 370:128567
· Jinyu Ye, Huan Gao, Junkang Wu, Manjun Zhan, Guangping Yang, Ran Yu*.2022. Transient disturbance of CeO2 nanoparticles enhances N2O emissions during biological wastewater treatment, Biochemical Engineering Journal,187:108620
· Jinyu Ye,Huan Gao, Junkang Wu, Guangping Yang, Lijie Duan, Ran Yu*. 2022. Long-term exposure to nano-TiO2 interferes with microbial metabolism and electron behavior to influence wastewater nitrogen removal and associated N2O emission, Environmental Pollution, 311:119930
· Huan Gao, Junkang Wu, Yan Chang, Jinyu Ye, Guangping Yang, Ran Yu*. 2022. Exogenous N-acyl-homoserine lactone-based quorum sensing regulation benefits Nitrosomonas europaea resistance to CeO2 nanoparticle acute stress, Environmental Science: Nano, 9: 3599-3612
· Huan Gao, Jinyu Ye, Runyu Zhao, Manjun Zhan, Guangping Yang, Ran Yu*. 2022. Pluripotency of endogenous AHL-mediated quorum sensing in adaptation and recovery of biological nitrogen removal system under ZnO nanoparticle long-term exposure, Science of The Total Environment, 842: 156911
· Moye Luo, Chuya Wang, Xue He, Manjun Zhan, Ran Yu*. 2022. Photocatalytic oxidation degradation of inhibitory fatty acids for aged Chlorella vulgaris cultivation medium recycling, Bioprocess and Biosystems Engineering, 45(7): 1211-1222
· Mengting Xue, Huan Gao, Xiaona Dong, Manjun Zhan, Guangping Yang, Ran Yu*. 2022. Promotion and mechanisms of Bdellovibrio sp. Y38 on membrane fouling alleviation in membrane bioreactor, Environmental Research, 212, Part D: 113593
· Tingting Cui, Siyuan Zhang, Jinyu Ye, Lei Gao, Manjun Zhan, Ran Yu*. 2022.Distribution, dissemination and fate of antibiotic resistance genes during sewage sludge processing—a review, Water Air & Soil Pollution. 233:138
· Jinyu Ye, Huan Gao, Carlos Domingo-Félez, Junkang Wu, Manjun Zhan, Ran Yu*, Barth F.Smets. 2022. Chronic effects of cerium dioxide nanoparticles on biological nitrogen removal and nitrous oxide emission: Insight into impact mechanism and performance recovery potential, Bioresource Technology, 351: 126966
· Chunhui Yan, Manjun Zhan, Kewei Xv, Siyuan Zhang, Ting Liang, Ran Yu*. 2022. Sludge dewaterability enhancement under low temperature condition with cold-tolerant Bdellovibrio sp. CLL13, Science of The Total Environment, 820: 153269
· Xiaodong Zhang, Moye Luo, Shaopo Deng, Tao Long, Liwei Sun, Ran Yu*. 2022. Field study of microbial community structure and dechlorination activity in a multi-solvents co-contaminated site undergoing natural attenuation, Journal of Hazardous Materials, 423, Part A: 127010
· Peng Chen, Junkang Wu, Xiwu Lu*, Ran Yu*. 2021. Denitrifying phosphorus removal and microbial community characteristics of two-sludge DEPHANOX system: Effects of COD/TP ratio, Biochemical Engineering Journal, 172: 108059
· Yin Cui, Huan Gao, Ran Yu*, Lei Gao, Manjun Zhan. 2021. Biological-based control strategies for MBR membrane biofouling: A review,Water Science and Technology, 83(11): 2597–2614
· Jinyu Ye, Huan Gao, Carlos Domingo-Felez, Junkang Wu, Manjun Zhan, Ran Yu*, Barth F. Smets. 2021.Insights into chronic zinc oxide nanoparticle stress responses of biological nitrogen removal system with nitrous oxide emission and its recovery potential, Bioresource Technology , 327: 124797
· Jinyu Ye, Huan Gao, Junkang Wu, Ran Yu*. 2021.Effects of ZnO nanoparticles on flocculation and sedimentation of activated sludge in wastewater treatment process, Environmental Research, 192: 110256
· Huan Gao, Hongjun Ji, Ran Yu*, Guangcan Zhu*. 2021. Effects of ozonation on disinfection by-product formation potentials and biostability in a pilot-scale drinking water treatment plant with micro-polluted water, Environmental Technology, 42:20, 3254-3265
· Feng Ling, Yongze Lu, Ce Wang, Zhan Yuan, Ran Yu*, Guangcan Zhu*. 2020. Electron transfer pathways and kinetic analysis of cathodic simultaneous nitrification and denitrification process in microbial fuel cell system, Environmental Research, 186: 109505
· Xue He, Yang Yu, Zhongqiang Zhu, Mengting Xue, Panpan Li，Ran Yu* . 2020. Aging forming process of Chlorella vulgaris growing medium and its cultivation inhibition mechanism, Bioprocess and Biosystems Engineering, 43:1921–1929
· Xiaodong Zhang, Xin Zhu, Ranran Chen, Shaopo Deng, Ran Yu*, Tao Long*. 2019. Assessment of biodegradation in natural attenuation process of chlorinated hydrocarbons contaminated site: an anaerobic microcosm study, Soil & Sediment Contamination. 29(2): 165-179
· Jinyu Ye, Huan Gao, Junkang Wu, Yan Chang, Zhoukai Chen, Ran Yu*. 2020. Responses of nitrogen transformation processes and N2O emissions in biological nitrogen removal system to short-term ZnO nanoparticle stress, Science of The Total Environment, 705: 135916
· Junkang Wu, Zhoukai Chen, Shiwen Zhang, Lei Gao, Ran Yu* Manjun Zhan*. 2019. Mechanistic understanding of predatory bacteria-induced biolysis for waste sludge dewaterability improvement. Water Air & Soil Pollution. 230(8): 194
· Junkang Wu, Huan Gao, Jinyu Ye, Yan Chang, Ran Yu*, Zhen Ding*, Guangcan Zhu. 2019. Effects of exogenous N-acyl-homoserine lactone as signal molecule on Nitrosomonas europaea under ZnO nanoparticle Stress, International Journal of Environmental Research and Public Health, 16(16): 3003
· Junkang Wu, Manjun Zhan, Yan Chang, Qingxian Su, Ran Yu*. 2018.Adaption and recovery of Nitrosomonas europaea to chronic TiO2 nanoparticle exposure. Water Research. 147: 429-439
· Junkang Wu, Guangcan Zhu, Ran Yu*.2018. Fates and impacts of nanomaterial contaminants in biological wastewater treatment system: A review.Water Air & Soil Pollution. 229 (1) :9
· Junkang Wu, Yan Chang, Huan Gao, Geyu Liang, Ran Yu*, Zhen Ding*. 2018. Responses and recovery assessment of continuously cultured Nitrosomonas europaea under chronic ZnO nanoparticle stress: Effects of dissolved oxygen, Chemosphere, 195: 693-701
· Ran Yu, Octavio Perez-Garcia, Huijie Lu*, Kartik Chandran*. 2018. Nitrosomonas europaea adaptation to anoxic-oxic cycling: Insights from transcription analysis, proteomics and metabolic network modeling, Science of The Total Environment, 615: 1566-1573
· 朱理想，罗默也，张晓东，龙涛，余冉*. 2023. 醌指纹法指示三氯乙烯污染土功能微生物活性应用研究[J]. 化工学报，74（06）：2647-2654
· 马鉴云，李智，顾俊，汪菲，侯保连，余冉*. 2023.污泥预调理方式影响下的市政污泥“深度脱水-干化-焚烧”碳排放研究[J]. 中国环境科学
· 张靖雪，李盼盼，于洋，曾苏，余冉*，杨广平. 2022. 基于固液分离预处理的餐厨垃圾厌氧发酵技术研究[J].中国环境科学，42 (3): 1252-1258
· 汪润民，张晓东，徐成华，于丹丹，余冉* . 2022.高效重质石油降解菌群构建及降解性能评价[J]. 化工学报，41(10):5653-5660
· 祝冲之，余冉*，龙涛，张晓东，罗默也，孙丽伟. 2022. 醌指纹法及其在环境微生物领域的应用[J]. 环境污染与防治.，44（1）：85-91.
· 张涛，余冉*. 2022. 低温市政污水生物处理工艺研究进展[J]. 净水技术，41（6）：24-29，38
· 谢林培, 祝冲之, 张晓东，余冉*, 展漫军*, 孙丽伟. 2021. 强化生物堆法修复多环芳烃污染土壤初步研究[J].生态与农村环境学报, 37（1）：96-102
· 《土壤污染风险管控与修复技术手册》. 2021. ISBN 9787511146601，参编